The problem with this is that the elevation of the surface objects can be exaggerated depending on what setting you choose (see pic)
and when was the 3D survey done (a few more years growth on the trees ?

)
Although It does sort of show the taller tree slightly to the left of centre of the smaller hill which I could see clearly in the OPs phone video of that area. I think this tree could have been right in the ACs path since the original post( shows the AC passing off centre as well .The OP says this as well)
It also depend greatly on the placement of wp2. If the last mission wasn't saved and the first one didn't have wp2 (you said you added that while hovering .How do you know where wp2 was ? Or am I mistaken in my understanding .