From DJI update pages:
Battery Firmware Update
If you use several batteries for a quadcopter, do not forget to update the firmware of each of them.
To do this, after the drone/controller update is completed, change the Phantom 3 battery and start the process again – the Phantom software itself will not be updated again, but the smart battery will receive the current software version. The process is worth repeating with each battery that you have.